rs47827264 SNP Detail

Summary

• ID
  rs47827264
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29923089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGGACAA AGTTCAGCAG
  TGTTTACCTT CCTGACTACT ATTTCCTGAC TTTTCTAGCC TAATACATAC ATATACATAC
  AAATACATAC ATGTATACTT ACATTTACAT TAATGAACTA ATGATTGACA TATTTAAAAT
  TTAAAGTTGA GATTTGTTCC TGGCCACCCC CAGAATTTGA AACACAACTG TTCTAACTCC
  M
  AGGTAATTCT CAGCCTTTAT CTTAGTTGGC TGGATTATAA GTAAATTTCA ATTGCTTTAT
  GGTATAGGTG GAATCAATTT TGAGATGCTA ATCTGTTTGA TTTTAATTTA TCTTCTGTAA
  AATGAGGGTG CAAAGTGATG TTCTGGTTGC TGCAGGAGCA GGGGACATTG TTATCCTGTT
  TTATATTCAG AGGTTATGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133092400	ENSMUSSNP704603	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47827264					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29923089 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr627673	regulatory region 627673			273 bp proximal
Strip2	striatin interacting protein 2			Intron
				Noncoding-Transcript-Variant