rs47826736 SNP Detail

Summary

• ID
  rs47826736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121663894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCTCAGG ACTCAGAGAA
  ACATTTATAT GATTGTTTTA TTACAATTAA TATGTAAGAA ATGCAGAGGA ACAGACATCA
  GGCAGGAAAA TGGATTTTGA GGATTTTCTA AGGTTTTTAA GAACCTCCAT GTGATATGTT
  CAGCTATATG AAAACTTCCT GAACCCAGTC CTTTTGGACT TTGAGGAAAC CTCTGTTTCA
  Y
  AGGCAGGAAT GTTAATAGGC TAATGGAAAT CCAGCTCTGG AGACTCGACT GCTGGGGCAT
  TCTTTCTGAT TGTATGTGCG TGTGTAGCAT TCTCCTTTCT GGGGTATGGT TATCCCTCAA
  GCTTTATCAC TGGCAAAGGG AGATTGGAGA TGAGAGGGTG TCTTTATGGT CATTGCCAAG
  ACAGAGAGGC AGGGAAAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135730734	ENSMUSSNP6759229	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320906548	CHEV_3_121573163	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47826736					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121663894 () rs orientation: forward

Symbol	Name	Function Class
Gm65477	predicted gene, 65477	822 bp downstream
Rr584188	regulatory region 584188	221 bp distal
Rr584189	regulatory region 584189	543 bp proximal
Rr584190	regulatory region 584190	1583 bp proximal