rs47824699 SNP Detail

Summary

• ID
  rs47824699
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102420722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGTCCTTT CTCCTGAAGG AGGAGGGCTT
  CTTTCCTGTA GGGAAACTTT CCATTTCCCT TCCTGAGTAA CATGTAGAAT CTTAGCAGGA
  AAGGGGGAAG GCAGGTCAAC ACTGAGAGGC TCAGACATTT GGAACTAGAG AGACAGAACA
  R
  CACCTTAATT TGTTACTGTC TGTACTTTTG ATGATATTGG CACCTCCTTA CAGTCGTAAC
  AGTCAGTATG TGATCGTTTC ATCCATGGTT ATGAGATTCT AGTCTCCAGG AGAGTACCTG
  CATGCCTAAG TCTAGAACCC AGAGACTTGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147116644	ENSMUSSNP6325367	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320439098	CHEV_2_102430534	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47824699					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102420722 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr373606	regulatory region 373606	1947 bp downstream
Rr561706	regulatory region 561706	25 bp distal
Rr561707	regulatory region 561707	165 bp distal