rs47822078 SNP Detail

Summary

• ID
  rs47822078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127152989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCAAGAGA GCTCAGTCTG GGCTACTGAG AGAATTCGAC
  GTTTTTCATG TTGTCCCCTA ATTTTTATTT TTAGGACCTT TCTCTGTTGC CTAGGCTGGC
  Y
  TTGAACTCCT GAGCTCTGGT GTCCTTCTTT TCTTCACCTT CCCAACATGC TAGACAAGAC
  CCCTGGCTTG GGACTACCTC CTCAAATCAA GAGAGGATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147525565	ENSMUSSNP4696316	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47822078					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127152989 () rs orientation: forward

Symbol	Name	Function Class
Gm54150	predicted gene, 54150	within coordinates
Rr397283	regulatory region 397283	1977 bp downstream
Rr397284	regulatory region 397284	35 bp downstream
Rr564490	regulatory region 564490	1989 bp distal
Rr564492	regulatory region 564492	within coordinates
Rr564493	regulatory region 564493	307 bp proximal