rs47820559 SNP Detail

Summary

• ID
  rs47820559
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8637489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTCCCCC TCCATCCAGT
  GAGACAACAT CATACAATAT TTAAGCCTTT CTGAGAAGTA TTTCTCAATT GCAAATATAT
  TTCCTTGGGA AAGATCATGC AACAGTTTTG TTTGAACTTA GTCCATAAAA AGACACAGAC
  ACACACACAC ACACACCTCA ACTTCTACGG CCACGCTGTC ATTACATTAA TTGTAAATGT
  T
  ATGAGAAGAA AGGCAGTCGG TTGTAGATTT ATTTAAAGCA ATGCCGGATG CTGTCTAGCT
  CTAAGTCCCT CGCACAGAGT CAGCACAGCC CACGGAGCAG CTCCAGCTCA CACTTACTCA
  TTCTTTCATA GTCTCAAAAT CATGGTTAGT ATTCTCCAAA AGTTACATAC GGCAGCTGGG
  TGACAACGCT CAGGGGTGGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146766609	ENSMUSSNP2594092	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323245268	CHEV_10_8481523	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47820559					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8637489 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	within coordinates
Rr427375	regulatory region 427375	275 bp distal
Rr427376	regulatory region 427376	309 bp proximal
Rr427377	regulatory region 427377	1779 bp proximal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	660 bp downstream
Tssr96639	transcription start site region 96639	1099 bp upstream
Tssr96640	transcription start site region 96640	494 bp downstream
Tssr96641	transcription start site region 96641	544 bp downstream
Tssr96642	transcription start site region 96642	563 bp downstream
Tssr96643	transcription start site region 96643	624 bp downstream
Tssr96644	transcription start site region 96644	726 bp downstream
Tssr96645	transcription start site region 96645	854 bp downstream