rs47820234 SNP Detail

Summary

• ID
  rs47820234
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30069271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTGCCCA TTGTTGAAGT
  GCTCTTTTTC TTTTACTTTT TTTTTTTTTT TTAATTTAGC CATAAATTGG AATAGCTGGA
  GCTATGAGCT GTTCTATTTT CTTCCTGTCA GGATGAGAGA TTTGTTTTAT GATGCATTGT
  GTATTAAATA CAAGTAATCT GGGGAACTGA GTGCTTCAGA CACTTCAGCT TGATCAGGGG
  A
  TCTGGGTGCT CAGTGCCCCA AACCATTCCA AGCCCCTACT TCACCCCACC CTGGCCTTGC
  AGCACCCACT GCCTAACCTT TTTCAAAGCT TCTCAGAAAA GCAGGAAAGG TTGGTGGCGA
  CACAAAGGTC CTGGGAAATC AGTGACAGGT CCTAACTAAA TTCACATTTC AGGGAAAAAA
  AAAAAAAAAC CTTTGAGGTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss134728243	ENSMUSSNP7141200	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs47820234					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30069271 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D3Mit46	DNA segment, Chr 3, Massachusetts Institute of Technology 46			1518 bp distal
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1			1397 bp distal
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3			1647 bp distal
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574702	regulatory region 574702			1977 bp distal
Rr574703	regulatory region 574703			1381 bp distal
Rr574704	regulatory region 574704			41 bp proximal
Rr574705	regulatory region 574705			306 bp proximal
Rr574706	regulatory region 574706			1509 bp proximal
Tssr32876	transcription start site region 32876			1973 bp upstream
Tssr32877	transcription start site region 32877			1948 bp upstream
Tssr32878	transcription start site region 32878			1876 bp upstream
Tssr32879	transcription start site region 32879			1862 bp upstream
Tssr32880	transcription start site region 32880			1782 bp upstream
Tssr32881	transcription start site region 32881			1753 bp upstream
Tssr32882	transcription start site region 32882			1723 bp upstream
Tssr32883	transcription start site region 32883			732 bp upstream