rs47811180 SNP Detail

Summary

• ID
  rs47811180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103115298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCCAAG ATAGAGTTTC
  CCAGTGTAAC AGCCATGGCT GTCCTGGAAC TCACTTTGTA GACCCGGCTG GTTCGAACTC
  ACAGAGGTCC TTTGTCTTCT GAGTGCTGGG ATTAAAGACA GTTTTCTTGC GTATTTAAAC
  ACAATGGAAC TTTTGAAATT ATCACAATAA AACTTCAGGC TGGGCTACAA GCAAACTCCC
  Y
  TGCTAAGCCC ATCCGGTTTG CTCTTACCTG TGACCTTACC ATAAGAATGG GTTCTATTGA
  CTAGCTCCAG GGAGGAAGGA TTTGTCATGA ACAAAAGGTT CTATTGACTG AGAGGATTGC
  TCGGCTTTTG GGGGGTGGGG GGTGGGGATT CAGGTAAAGG CTGGCTTCAT AGACTAGTAA
  AAGATCTCCA GGTATTAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60429786	NES15927504	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47811180					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60429786	NES15927504	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103115298 () rs orientation: forward

Symbol	Name	Function Class
2410024N13Rik	RIKEN cDNA 2410024N13 gene	within coordinates
Rr375502	regulatory region 375502	1613 bp downstream
Rr375503	regulatory region 375503	within coordinates
Rr397899	regulatory region 397899	1238 bp downstream
Rr582336	regulatory region 582336	1027 bp distal