rs47810449 SNP Detail

Summary

• ID
  rs47810449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104946886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAAGCCT GTCTGCAGGA
  GACATGACTC ACACACAATG CCACAACGCC ACAATGCACC TCTGAGCATC ATCAGAACGA
  AAGCGTTCTA CCTGCCAAAT CTGGGTAAGG AAACGTCTGC TCTTACTCCC CAGTAACTGC
  AAGGAAACAA ATCAACATGC GCTCATTTCC ACTATTTAGA AGATGGCCAA ACACTGCCAA
  Y
  TTCTATTTTT CCCATCACGT CTACACATTA AGTGTTGGCT TATAAACAAA TGTTTTTGCT
  TATATTTTTC CAATAGTATT AAGCTACTAT AAAAAAGAAA AGAAAGACAG ACACACATAC
  AACCCACAAC ATGAAAGATG TGAAACTGAC GAGAGAAAAA AAGGAGGCAT GGGGAAAGAA
  GTAGGTAGAG GAAAGGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60431130	NES15934556	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47810449					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431130	NES15934556	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104946886 () rs orientation: forward

Symbol	Name	Function Class
Cttnbp2nl	CTTNBP2 N-terminal like	Intron
Rr582653	regulatory region 582653	472 bp proximal
Rr582654	regulatory region 582654	1476 bp proximal