rs47808006 SNP Detail

Summary

• ID
  rs47808006
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143869518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGAAGAGA AACAACCCTT
  GCAGGCTGTC CTCTGACCTC CACATACATG CTACGGTTTC TGTGTGTGCA GAGACAGAGA
  AGGAGAAAGA AAGGCAAAGA CAGAGAAAAG GGAGGAGGAA TAAATAAATA AATATTTTAA
  AAAATATTTT CTTTATTACC CACAACCCAT GGTTTTATAG TTCACAGACC CCAAGTCTTT
  K
  TGACCAAAGT CAAAGTCTCT TGCCAATCAG CCTGTGTGAG TGAGGCGGGT GCTGAGCCTC
  TCATTGAGTG GACACAATGC CAAAGGTACG AGACCCCACA AGGCTTTGGA ATTCACTGTG
  CTTGTTATGA CACATGAACA TCCTCCCTCA ACAGTGCATG TAAATTCCAC TCCAGTCTTG
  GCATCTCCAG TGGAAAGAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss136029079	ENSMUSSNP5284660	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47808006					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143869518 () rs orientation: forward

Symbol	Name	Function Class
Gm34162	predicted gene, 34162	within coordinates
Rr586590	regulatory region 586590	98 bp proximal
Rr586591	regulatory region 586591	982 bp proximal