rs47804442 SNP Detail

Summary

• ID
  rs47804442
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107161796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGAGCTT GTATTTCTGA
  TCTTCTTGCC TCTACTTCTA GAGTTTGAAG ATTATAGACA CCTGACACCA TGCCTGATTT
  GCTGAGCACT GTTTTGTTCT TATTTCTGGA TTGGGGATGA AACCCAGAGT CTTGTGTGTG
  CTAGGCAAAC TCTCTAGCCA GTAGTTTTTG ATACAGTTCT CATTATATAC CCCAGGTTGG
  T
  TCTGAACGCC AATCCTCCTG CCTCTGTTTC CCTAGTGCTA GGACAGCAGG CGTTTGCCAC
  CACACCTGGA AAACAGAACT CTTTTTAACT GAGAGAAGAC AGTTAACAGA CACAAGTGAG
  TTCCATGAGC TGGCCCTGGG TCAGGTGGCT TCCAGGGAAC TGCTCGTCAG ACTGTCTCCA
  GCAATTTGTT CTGTCCCACC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147177024	ENSMUSSNP3320165	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs47804442					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107161796 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dio1	deiodinase, iodothyronine, type I			Intron
				Noncoding-Transcript-Variant
Rr596967	regulatory region 596967			1202 bp distal
Rr596968	regulatory region 596968			752 bp distal