rs47799494 SNP Detail

Summary

• ID
  rs47799494
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172459819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTGTTTCA TATTGATTCT ATGTTGAAAT AATATTTTTG
  ACTTATTGGA TTAGTACAAA ATTAACTTCA CCTGCTTCTT TTTCATCTTT TTCGTTTTTT
  K
  TTTTTGTTTT TTTTTTAAAA CGTAGCTGCT AGTAAAATTT AAAATTACAA GTGTGTCTCT
  ATGACATTTG GACCTCTAGT AAAAGGGCTT TGAACTGAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss120015545	PARCsnp_1.10914	PARC_SEQ	INBRED	f	SNP			G	T
ss146197844	ENSMUSSNP6063345	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs47799494					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172459819 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	Intron
Gm35601	predicted gene, 35601	777 bp upstream
Rr396594	regulatory region 396594	641 bp upstream
Rr423641	regulatory region 423641	42 bp proximal
Rr423642	regulatory region 423642	506 bp proximal
Rr423643	regulatory region 423643	700 bp proximal
Rr423644	regulatory region 423644	805 bp proximal
Rr423645	regulatory region 423645	1553 bp proximal
Tssr10245	transcription start site region 10245	812 bp upstream
Tssr15247	transcription start site region 15247	539 bp downstream
Tssr15248	transcription start site region 15248	563 bp downstream
Tssr15249	transcription start site region 15249	679 bp downstream