rs47798494 SNP Detail

Summary

• ID
  rs47798494
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127996285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATACTGTCA GTCTATAAAA AGGACTTATT TATTCATCTT
  TTATTTATGT GTATGTGCGC ATCATGTGTG TGCAGGTTGT TCTCAGGACA GAGGGCAGTG
  R
  AGCCCCTAAA ACTAGATGTA CAGGCAGTTA TGAGCCATCT GAGGGTGCAA AGAACCCAGG
  TACACAAGAA GAGCAGTATA TGCTCACAGC CGTTGAGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147553380	ENSMUSSNP6112620	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47798494					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127996285 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l11	BCL2 like 11	Intron
Rr367305	regulatory region 367305	1271 bp downstream
Rr367306	regulatory region 367306	1891 bp upstream
Rr564661	regulatory region 564661	425 bp distal
Rr564662	regulatory region 564662	1133 bp proximal
Rr564663	regulatory region 564663	1756 bp proximal