rs47798378 SNP Detail

Summary

• ID
  rs47798378
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148601099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCAGCTGA GGCTTTCCCA
  GGTAAGCCTT GGAGGTTCCT TCCCGCCAAG TCCTTTCCTG TCTCTCTCCT GTCTTGCTGC
  TCTTCCTGGT TGGTGAAGCG GGCATGGAAA AGATACAGCT CCTGCGGTGT CCAGGACTTG
  CCTACCACAC ATTTCAGAAT GCATGTCCAC AACGTCCTGG AGACTGAGAC CACAATCCAG
  K
  AGAGCTAGGG AGCTGGGAGG CACTCCCTCC GACCCTTTTC AGGACAACAG TGTTGGGCTG
  CAGCCTCCAG CCTCAACTCC AAACCCAGCC ACAGCTTAGG AGGAAACAGC TACCCTAGTG
  CAGTAAGGGG GGTCGGCGTT TGCGTCACAT GAGAGGGTGT GGCTTCCTAT GGTTTCTGAC
  AGAAGTCAAG CAAATTTTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136065052	ENSMUSSNP4556530	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47798378					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148601099 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587222	regulatory region 587222	40 bp proximal
Rr587223	regulatory region 587223	860 bp proximal