rs47794021 SNP Detail

Summary

• ID
  rs47794021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116023284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGTAGGA GGAGAAAGGT
  CCCAAGTGTA GGTAAAAGAG TTGCAGACTG CCACCACTCT CACTGCTAGG AGCCGATAAG
  AACACAAAGC AACACAACCA TAACTTATAC ACAGAGGACC CAGCATAGAC CCATGCAGGC
  TCCATGGTTA CCACGTCAGT ATCTATGAAT CTAGATGAGT CCTTCTTAGG TGATTCTCTG
  R
  GCGTTATTGT GGTGTCCTGG ACCACTCTCC TACAATTCTT CCTCCCCTTC TCCCATGGGG
  CTTCCTGAAC TAATGCTTGG CCATGGGTCT CTGCATTTGC TTCCATCCAC TGCTGGATGA
  CCCTCTCTGA TAACAAATGG GCTAATCCAG TCTTTGAATA TAGCAGAACA ACAGTGGGAA
  TCATTTCATT GACTTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60437848	NES15932539	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47794021					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437848	NES15932539	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116023284 () rs orientation: forward

Symbol	Name	Function Class
Rr583675	regulatory region 583675	964 bp distal
Rr583676	regulatory region 583676	413 bp distal