rs47792496 SNP Detail

Summary

• ID
  rs47792496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:40756398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTGCCC TCTTATTTTT
  AGATAGATAA GAAAGCCATG TACAAAGCTG GAATGGTACA GAGAGTCCAA AATGAGGTGA
  AAATACATTG CCAGTTGAAA CACCCCTCTG TCTTGGAGGT AAGATACCAG ATGTATTAAA
  GTAGTTAAGG AAAGCTGGAT GTTCGTATAG TTGACGGCAC CCTTTTCTGT TTTAGCTCTA
  Y
  AATTACTTTG AAGATAACAA TTATGTCTAC CTGGTATTGG AAATGTGCCA CAATGGAGAA
  ATGAACAGAT ATCTGAAGAA CAGAATGAAG CCTTTCTCAG AAAGGGAAGG TGGGTGTCTT
  TTGGGGGTTG GGGTGTGGAA TTTGTCTCTC TCTGTTCTGT TTGGTAAAAC TTGGCTTTTC
  AATGTGTGGT TTTGAAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60400507	NES15892791	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47792496					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60400507	NES15892791	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40756398 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13112	CpG island 13112			1050 bp distal
Plk4	polo like kinase 4			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr575858	regulatory region 575858			1699 bp distal
Rr575859	regulatory region 575859			1833 bp distal
Tssr28972	transcription start site region 28972			1913 bp downstream
Tssr28973	transcription start site region 28973			1895 bp downstream
Tssr28974	transcription start site region 28974			1177 bp downstream