rs47789875 SNP Detail

Summary

• ID
  rs47789875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17255017 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T GCTCTGACCA CTGAAACTCA GGAAAGAGTT TCAGTCTTCT
  CAGTCTGCTG ATAGAGAATA ACAGAATCAC AAGAGGAACA AGCTCTAACC AGAGACAACT
  R
  TAACAACTGA CTCCAGAGTT TACCAGATGG TGAAAGGCAG ACTTAAGAAT CTTACGAACA
  AAAACCAAGA CCACTCATCA TCATCAAAAC CCAGTACTCC C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144777765	ENSMUSSNP3250208	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47789875					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17255017 () rs orientation: reverse

Symbol	Name	Function Class
Rr573816	regulatory region 573816	994 bp proximal