rs47788468 SNP Detail

Summary

• ID
  rs47788468
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38539655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACT GCGTTAGTCA TTACTTAGCC
  C
  GTGTCTCTAG CAGCATAGGA CAAGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss134837215	ENSMUSSNP4989588	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320719962	CHEV_3_38384428	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47788468					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38539655 () rs orientation: forward

Symbol	Name	Function Class
Ankrd50	ankyrin repeat domain 50	662 bp upstream
Cpgi13104	CpG island 13104	100 bp distal
Gm65619	predicted gene, 65619	23 bp downstream
Rr397648	regulatory region 397648	456 bp downstream
Rr575675	regulatory region 575675	1260 bp distal
Rr575676	regulatory region 575676	391 bp distal
Rr575677	regulatory region 575677	within coordinates
Tssr28929	transcription start site region 28929	295 bp downstream
Tssr33057	transcription start site region 33057	715 bp upstream
Tssr33058	transcription start site region 33058	684 bp upstream
Tssr33059	transcription start site region 33059	642 bp upstream