rs47787794 SNP Detail

Summary

• ID
  rs47787794
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129085773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCAATTGT CCTGCTATGA GTGTGTAGTA CTTCAGTCAT
  CACAAACAAG CAATTGCCAT TTAAAAGTCT TGAGCGGTCA CTTCTAGGCC TGTGCCTCCC
  R
  GCTGGGCCAC CCAGGGGCCT TAACTGGGCC TCCTGGTCTA AGAATAAGCT TGTGTGTTTA
  ATTAGGTCAC TCTCCCGCCG ACCTAGAATC TCTCTCTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147584265	ENSMUSSNP4026274	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47787794					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129085773 () rs orientation: forward

Symbol	Name	Function Class
Rr373844	regulatory region 373844	800 bp downstream
Rr564887	regulatory region 564887	1922 bp distal
Rr564888	regulatory region 564888	1002 bp distal
Rr564889	regulatory region 564889	257 bp distal
Rr564890	regulatory region 564890	within coordinates
Rr564891	regulatory region 564891	785 bp proximal
Rr564892	regulatory region 564892	800 bp proximal
Rr564893	regulatory region 564893	1656 bp proximal