rs47785666 SNP Detail

Summary

• ID
  rs47785666
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152592573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGATCTAG TGTCTCTGCA
  TGCCATATGG GTTTGAAATG GCTGGGACCA AGGTCACACC CTGGCTAGAT CTGGGAAGCA
  AGAGCTGATT GTGGGGGTGG GAAGGGGGAG TTTCTTTTAC TTTATCCCTG TAGGGGGCAC
  AGTTCTTTTC TTAAAGTGCT GTCTCTAGAC CAAGGCTGCT TTAAATCTTC TCACTGATGT
  K
  GGTAAAATGA AACAGAAATC AGAAAGGCCC AAAATGACTC ACAAGACTTT CATGGGCTCC
  TTATAAAACC CAAGGTCCCT GGGGACTTTC CATAAGCAAG TCAATTGTTT AAGGAAAAAG
  GAAAGGAAGA AAAACAGCAA GAATGACTCT ATCAATACCC AAACAGGCCT TAGGTAAGAA
  AAGTTTATAT GGCCCTAGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136104399	ENSMUSSNP3452494	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss321029043	CHEV_3_152549900	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47785666					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152592573 () rs orientation: forward

Symbol	Name	Function Class
D3Mit322	DNA Segment, Chr 3, Massachusetts Institute of Technology 322	262 bp distal
Rr587620	regulatory region 587620	57 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron