rs47781124 SNP Detail

Summary

• ID
  rs47781124
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40445570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGGAAGT TAAATATTGT
  GATTTTTCAG TGTCACTTTA CTGACTGTGT CGGTATGTTT GTGTGCACAT GCATGCATGT
  GTGCCTCTGA GTGTGAAAGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTTCCTGTGC ATGCACAAAT GCTCGCATGT GTGACCAGAA AAGATTAGAA GAAAGGCCAT
  R
  ACTCTCTTCT GGCTATTATC ATTATTATTT GACAATAGAG GTTGTGCTAA AACACTTATT
  TCTGAAACAT TCAAAACACA TCTTGTTGTA TGCAATGTAA TTATCAAATT ATGTACAGAG
  ATAGTGTTTT GTTTTGTTTC ATTTTTTACC TGCTCCAGTT TCTTTCCCAG GGGCCTCTAG
  TCCCTGAGGA GGTGGGCGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss60393800	NES15889706	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs47781124					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393800	NES15889706	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40445570 () rs orientation: forward

Symbol	Name	Function Class
Rr575809	regulatory region 575809	259 bp proximal
Rr575810	regulatory region 575810	403 bp proximal