rs47779866 SNP Detail

Summary

• ID
  rs47779866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118953331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTAACTAGAC AGTGGACTCG CTTAAGGTTA CTCACAATGA
  TTAATGCCAC TGATCTCCTT TAGCAGGAGT GATGAAATAC TTACTTCATC TGCTGAAAAC
  R
  AACAAATCAT CCACTGTGTA CTAGCACAGA GGATGCCCAC AGATGCACTG GCAAATACTG
  TGGGGACCTG AACGCACGGA AGGCAGGAGA CATAAAGAAT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133585818	ENSMUSSNP4541005	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47779866					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118953331 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Gm50599	predicted gene, 50599			within coordinates
Rr637560	regulatory region 637560			1028 bp proximal