rs47773162 SNP Detail

Summary

• ID
  rs47773162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152103633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT GATTTGGTAA TAAACTTTCA
  Y
  AGCATTTACA AGCAGCAAAT TATCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136102887	ENSMUSSNP710009	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321028818	CHEV_3_152060960	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47773162					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152103633 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13950	CpG island 13950			723 bp distal
Rr587543	regulatory region 587543			1854 bp distal
Rr587546	regulatory region 587546			1925 bp distal
Rr587547	regulatory region 587547			1292 bp distal
Rr587548	regulatory region 587548			1735 bp distal
Rr587549	regulatory region 587549			1700 bp distal
Rr587550	regulatory region 587550			1278 bp distal
Rr587551	regulatory region 587551			62 bp distal
Rr587552	regulatory region 587552			278 bp distal
Tssr32411	transcription start site region 32411			1937 bp downstream
Tssr32412	transcription start site region 32412			1914 bp downstream
Tssr32413	transcription start site region 32413			1602 bp downstream
Tssr32414	transcription start site region 32414			1294 bp downstream
Zzz3	zinc finger, ZZ domain containing 3			Intron
				Noncoding-Transcript-Variant