rs47772919 SNP Detail

Summary

• ID
  rs47772919
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126454901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGAATTC AGAAAGAAGG
  CAGTTTTCTC ATGTTGGAGG AACGCTGACT AATTCCCTGT ACCTCCTTCA CTGTCGAGCA
  TCTGACTCAT GTGTATTTAA GGGAACTAGC TGATGACTGG ACTCATGCAG CTACGAGGAA
  AACATGGGAT CCAGACCTGT TTGTTACCCT GTGTTCTTAG GGCCTCTTTG ATGCGGCAGC
  Y
  CTGGTGACTC ACTTCAGCTC GGTTTGCAGA ACACTTGAAT GAAAACTTCA TGCACAGTGA
  TAGTTAAGAA TGCTATGTAG ACTGAACTGA TGCGGGATGG TCAAATTCCT ACTTTCAAAT
  GAAATTTAAA AAGGCCAAAG TAAAGGTCTC TGCCTGGTTT CTCCAAAGCA GAGCCTGAGA
  GAAAGAGGTT GTCTGAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135838275	ENSMUSSNP6200619	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320947070	CHEV_3_126364170	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47772919					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126454901 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43005	predicted gene 43005			1127 bp upstream
Gm43006	predicted gene 43006			1929 bp downstream
Rr397996	regulatory region 397996			662 bp upstream
Rr584671	regulatory region 584671			within coordinates
Rr584672	regulatory region 584672			610 bp proximal