rs47768627 SNP Detail

Summary

• ID
  rs47768627
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:101007098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACACACCC TCTTCCACTG CACTTAGTCA GCCTACCTAA
  GCACAATGGG AGTCCTTCCT TCCTTCCTTC CTTCCTGTTT CTCCCTAGCT GTTGGAGATG
  W
  TTACCATCCA TGTATATAGC TTTTGACTTA GGCCAGTTCT GCTCCCCTAG GAGACAGGAG
  CAAGTTGGTA TGGAGGGTCT GTGGGGTCTC TTGCCCTCTT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss61202773	NES16711430	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs47768627					SNP	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61202773	NES16711430	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:101007098 () rs orientation: forward

Symbol	Name	Function Class
Gpat3	glycerol-3-phosphate acyltransferase 3	Intron
Rr615578	regulatory region 615578	1157 bp proximal