rs47766625 SNP Detail

Summary

• ID
  rs47766625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78872140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTAGAGT TCCCACTACT
  TATGAGGCTA AGCATTTTAA CAGCTGACCA GAAGAAAAAA AAAAAAAAAC ACATTGCCTG
  TGTGTGAGAG AACAAGTAAG AACTTTGTCT TAGATTTCAT TCTGTGGGTA AACTGCTTCC
  GCTGAGAAAA ACCCCAACTG TGGAGAACAA AGCTAAGTTT AACTTTCTAG GGAAACATGC
  R
  AGAAAACTGT AAGGACAATG AAGAAACAGC ATTTTGAACA TGAGCGAGCA ACAGATAAAA
  TTCTTTTTCT ACACAATAAA CGCTACAATG TCGATTCGAA ACTTACTGAG GAAAAAGGAA
  CACTACTTGA TGGTTAATAC TTGGAAAGTG CCAAGAATAA AATAGTGACA AAGCAATGCC
  CTCGGGTACC GTGCGAGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135365550	ENSMUSSNP519370	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47766625					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78872140 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13272	CpG island 13272	1967 bp proximal
Gm9762	predicted pseudogene 9762	1523 bp downstream
Gm65474	predicted gene, 65474	within coordinates
Gm66687	predicted gene, 66687	621 bp downstream
Rr578452	regulatory region 578452	11 bp distal
Rr578453	regulatory region 578453	1810 bp proximal
Rr578454	regulatory region 578454	1985 bp proximal