rs47762941 SNP Detail

Summary

• ID
  rs47762941
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15164795 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      A GACCTCCCGA CCTAAGGATC CATCCCATCT GCAGACACCA
  AACCCCCACA CTGTTGCTGT TGCCAAGAAG TACTTGCTGA TAGTAGCCTG ATATGGCTGT
  Y
  CTCTGAGAGG GTCTACCAGC ACCTGACCCA ATACAGAAGC AAATACTCAC AGCCAATCAT
  TGGAGTGAGC CCAGGAACCC TAATGGAAGA GCTAGGGGAA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135049566	ENSMUSSNP2011754	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47762941					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15164795 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr626644	regulatory region 626644			1831 bp proximal