rs47759723 SNP Detail

Summary

• ID
  rs47759723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22496084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGCTGAGC CATCTCTCCA
  GCCCAAATAT ATTGTAAATG GTAAGGGTGA AATTCACCTA TGAACAGAAG CTTCAGGAAC
  TCCAGGCAGG TTTCTTTGTC ATTTTAAACC TGGTGTTCAA AATCCATTTG CTAGAAGAAT
  GTTTGCTTTC CAAAACAATA ACATTATAGA CTGAAAAACC TTTCAGGATG CATGACTAAC
  Y
  GGCAAAAAGT CTTCAAGGTG ACCACGACAC TGATATACAT TAGCCTGAGA ATAGATTTGA
  ATCTAGAGTA ATTGAGCTCT TATGGAATGA GCCAGATGCT AAAAAGGGCC GAAAGAAAAT
  TCTGAGGATT CCTTCCCGAG GAGAAGCTGG ACGTGGTGGC GCACGCCTTT AATCCCAGCA
  CTCGGGAGGC AGAGGCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60871006	NES15983169	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47759723					SNP	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60871006	NES15983169	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22496084 () rs orientation: forward

Symbol	Name	Function Class
Rr379050	regulatory region 379050	1126 bp downstream
Rr627113	regulatory region 627113	1820 bp distal
Rr627114	regulatory region 627114	1955 bp distal
Rr627115	regulatory region 627115	574 bp proximal
Rr627116	regulatory region 627116	1213 bp proximal