rs47759554 SNP Detail

Summary

• ID
  rs47759554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153427779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTCATAA TATGTCACTC
  TTTGGTAAAA TGGAATATTA ACCTTCAGAC CCAATAACCC CTTATCTTAG TTTTCTTTCT
  ATTGCTGTGA TAAAACACTG TGACCAAAAG CAACTTAAAG GAGGAAAGGA GTGATTTCGT
  TTTATAGTTT CTAGTCTGTC ATTGAAGTCA GAGCAAGAAT TCAAGGCAGG AACCTGGAGG
  Y
  AGGAACTAAA TGGGTCACTG GGGAATACTG CTTTCTGGCT TGCTCATCCA TGGCCTGCTT
  ACCCATGGTT GCTTTCCTAT ACCACCTAGG ATCATCTGCC CAGAGGTAGC ACCATCCACA
  ACGGGATAAG CCCTTCCACA TTAAACACCA AATGAGAAAA CGTCTCACAG AGTTGCCTAA
  AGGCCAATCG AATGGAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136111650	ENSMUSSNP6760848	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47759554					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153427779 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587738	regulatory region 587738			1832 bp distal
Rr587739	regulatory region 587739			1461 bp proximal
Rr587740	regulatory region 587740			1907 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32435	transcription start site region 32435			1763 bp upstream
Tssr36239	transcription start site region 36239			1085 bp upstream