rs47758031 SNP Detail

Summary

• ID
  rs47758031
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126392179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAAACCCC AAACCTATCG
  CTAATTTCCA CTATCAGGGA AGGGATGCAT TTGTGTGTGT GTGTGTGTGT GTGCTGTAGG
  TTTCCTTACA GTTGCATAAA AGGAAGTGTG AGCACTTTTA AATCAAATGA AAATGATATC
  TTTATAGATG ATCTGCTGTT GAAACATGGA GTATGTCGGA AGAGCAGCTT AATTTAAATC
  Y
  CTCCCCTCCC CCCAAGCCCA AACCAGGCAG AGAGAAATCA CCTTACCCCA GAACCTGTTA
  AAGCACACCA GTGAGCTCGA GATTTATGTT TTAATGAAAA CAATCGCCAT ATTTACTTAG
  TTGGAACCAC GTTAATTATG TTTCCTACCG AAATAAACAG TTTTTTTTTT TTTTTCTTCT
  GTTCCCCAGC TCGGTCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135836856	ENSMUSSNP7084397	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320946589	CHEV_3_126301448	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47758031					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126392179 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			within coordinates
Gm43011	predicted gene 43011			1499 bp upstream
Rr397994	regulatory region 397994			756 bp upstream
Rr584646	regulatory region 584646			1106 bp distal
Rr584647	regulatory region 584647			1623 bp distal
Rr584648	regulatory region 584648			1511 bp distal
Rr584649	regulatory region 584649			within coordinates
Rr584650	regulatory region 584650			832 bp proximal
Tssr31569	transcription start site region 31569			1676 bp downstream
Tssr31570	transcription start site region 31570			1544 bp downstream
Tssr31571	transcription start site region 31571			1492 bp downstream
Tssr31572	transcription start site region 31572			1417 bp downstream
Tssr31573	transcription start site region 31573			1276 bp downstream
Tssr31574	transcription start site region 31574			1117 bp downstream
Tssr31575	transcription start site region 31575			1095 bp downstream