rs47754339 SNP Detail

Summary

• ID
  rs47754339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127685433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTCCTAG TCTTGAGCTA
  TATAATCTAA GGGAAAGCAG CAGAGCTATA AGAGACCAGT CACCATGATG GTGACTCTGT
  ATGTAAGTTA AGAGGACTAG CTTTGGAGTT TAGAGACCTG GGTTCTCCTC TGCTCTGGTA
  CCCCTTACCT TGTCAGCTTA CGTTGCCTGT GAACTCTTGC CTTACCAAGA GTTCAAATAT
  R
  CACTTGAGGG AGAAGCTGTT AAATGGCTTC CTTACATACA TCTATTACTG ATCTATTAGT
  ACTATCCTAA AGGGCCATTA TAGTGAATGA TATGGGTTAG TGCACTTGTA TTCCCTCTAT
  TTCTCTGCCA AACCGTGGTC TGTGGTCATA GCACTGCACC ACGTGAGACT CTGGTAAGAG
  ATGTCAAGGG TCAGACCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874355	ENSMUSSNP5395944	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320957948	CHEV_3_127594702	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47754339					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127685433 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	1860 bp distal
Rr584893	regulatory region 584893	1463 bp distal
Rr584894	regulatory region 584894	71 bp distal
Rr584895	regulatory region 584895	1556 bp proximal