rs47752353 SNP Detail

Summary

• ID
  rs47752353
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108668105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTCCAGG CCAGCCTGGG
  CTACATGAGG CTCCATTTCA GGTAAGGAAA TGAAAACCAG CATGTATCTC AGCAACAGTG
  TGCCTAGTAA CCTAGCATTC ACAAAGCTCT AGCAACACAC ATAACACACA TACATACACA
  CAAATTAATA TGCAAAAAGT AATTTTTGGA TCTGATGTGT CTTGCTCATC AGAATAAATA
  Y
  GATGTGTTTG CATTTTTTAC ATATTAACAG AAGAATCTGG AGTCAAGACA TGCGTCTACC
  TGCATAAATC CCTTTCCCTG GTATTTACAG AATACAATCT TGTCTTCCGT TGCGTAGAAA
  CATAAACTTC CCCCTGAATG TATTTCCTAT ATCTCCATGT CCTTTTCCCC TTCAGTTACG
  ATCTATTGTC CAGGCACATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135585696	ENSMUSSNP7180411	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47752353					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108668105 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aknad1	AKNA domain containing 1			Intron
				mRNA-UTR
Rr583305	regulatory region 583305			539 bp distal
Rr583306	regulatory region 583306			1661 bp proximal