rs47747274 SNP Detail

Summary

• ID
  rs47747274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119833325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAAAAGC CACAGCTCTC
  CTTTGAACCC ATGCTCACAC AATGGAAATC GGTGGCAGTG ACTACTAAAA GTAACCGTCA
  GGGTGACTGT ACTTAGTGAG CCTGCTTTGA CTTAGTGGTA CATCCTTTTG TGGCACTTGT
  TGGCAAGCAG GGTGTAATGC TCTGGTAGAA CATAACTCCT GAAGAGCATC ACGTAGCCTA
  Y
  AGCCTCCACA GAGCTCAGCT CAGCCCAAGT CTCCAGGCTC CTCCCTGCCC AGCACCTCAG
  GAGGCTCAAA CCTTTTCTCT TCTTTTTTTC TTCTTCTTTG TTTTTTCTTT TTGAGACACT
  CCCATGCCCA AAAATTTAGC CAAAGGACCA AGCTGAGGTA TAAGATTAGT GCATAAACCC
  ACATTGCAAT AATATATTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133593638	ENSMUSSNP6341142	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321929510	CHEV_6_119806382	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47747274					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119833325 () rs orientation: forward

Symbol	Name	Function Class
Rr380000	regulatory region 380000	1212 bp downstream
Rr637739	regulatory region 637739	1760 bp distal
Rr637740	regulatory region 637740	547 bp distal