rs47746526 SNP Detail

Summary

• ID
  rs47746526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44074283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCACGTCA GTCCTCCTGC
  CTCAGCTTCC ATTGGGGGTT CTTGCTATAA GCTAAATGTG GACCCCATCA GACTTTTACA
  GCTTGTGGTC TATCTCAGTC AAGGATGAAG CTCTGGTTTG CATGGTATTA GTGTAGCCAT
  GTTGGATCCT GCAAGGGTCA TCCCATCATG AAAGGACAGA CAATGAGTGG TTTTGTACAC
  Y
  GAGGTGACAT TGTCTACCTT TCTGTCTGAG ATCAGCAACC ATCGATTTGT AAGTTGACCA
  GGTCACCATT CATGAATGCT CTGATAACAC GTCAATTTCC AACACATTTC ACATCATACT
  TTTTTTTTCT AAATACCATC TGAGCTGTTG GGTAGAGAAT GGATTTGAAT GGATTTGTTG
  AGAGTCAAGA GTTGGTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146246414	ENSMUSSNP2545448	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321100054	CHEV_4_44087155	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47746526					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44074283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	1216 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	1516 bp distal
Rr591150	regulatory region 591150	1019 bp distal
Rr591151	regulatory region 591151	1286 bp distal
Rr591152	regulatory region 591152	97 bp distal
Tssr41482	transcription start site region 41482	1726 bp upstream
Tssr41483	transcription start site region 41483	1590 bp upstream
Tssr41484	transcription start site region 41484	1552 bp upstream
Tssr41485	transcription start site region 41485	1262 bp upstream