rs47746049 SNP Detail

Summary

• ID
  rs47746049
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124035982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATCACAA TTTATGTATT
  AAAACCATAA CTTCTAATAT GTAGAAATAG ATGTATATAA GCATTATTAG AAGATTATGA
  ACATGAGGCC CTGACATACT GAGATTAGGG TCTTAACACA AAAAATTATA GTAATCCCAC
  CAGCCTTAAT TTATTCCATG CACACACAAA GAGACACAAG TGTACTTGTC TGTAGCTTAT
  R
  GACCAAGTGT CTTAGAATAA ACCCTTCTCT ATCTGCAACT TGATCTACTA GTACAATTTG
  ATCTACTAGT ACAATCCTTA GACTTTTACT TTTGTTGCTT AAGTCTGTCT CTAATACTAG
  TTATGATGCT CTAAACAGAC TTTAAAAATT AAGATGATTA TGAATAAAAT CATAAAAATA
  GAGACTTAAT TGAAAATAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60445737	NES15938451	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47746049					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445737	NES15938451	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124035982 () rs orientation: forward

Symbol	Name	Function Class
Rr584580	regulatory region 584580	456 bp distal