rs47744316 SNP Detail

Summary

• ID
  rs47744316
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87654910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTG TGTGGGCTTT CTGTGCCCAG
  T
  AAACCCTGGC CTATCTGTCT TCCCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135467912	ENSMUSSNP3026110	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47744316					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87654910 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	Intron
Pear1	platelet endothelial aggregation receptor 1	1494 bp downstream
Rr579535	regulatory region 579535	1010 bp proximal
Rr579536	regulatory region 579536	1391 bp proximal
Rr579537	regulatory region 579537	1599 bp proximal
Tssr33946	transcription start site region 33946	930 bp downstream
Tssr33947	transcription start site region 33947	953 bp downstream
Tssr33948	transcription start site region 33948	974 bp downstream
Tssr33949	transcription start site region 33949	996 bp downstream
Tssr33950	transcription start site region 33950	1016 bp downstream