rs47742665 SNP Detail

Summary

• ID
  rs47742665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165789895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGT GGTTGGCTTG TAATAATTCC
  R
  AAAGGTCCTC CACCTCGGGT TCTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148247202	ENSMUSSNP4989735	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320609167	CHEV_2_165773475	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47742665					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165789895 () rs orientation: forward

Symbol	Name	Function Class
Rr570076	regulatory region 570076	1527 bp distal
Rr570077	regulatory region 570077	within coordinates
Rr570078	regulatory region 570078	1714 bp proximal
Tssr21743	transcription start site region 21743	129 bp upstream
Tssr27663	transcription start site region 27663	1830 bp downstream