rs47741003 SNP Detail

Summary

• ID
  rs47741003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118223280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAGGACAG TTGAAGACTG AAAGCATGGA CATGGTACAG
  GGAAACGAGC GATTCCCGGT CAGGCCTGGC CGTTTGGCTG TTCTACTATA GTCTTACTGG
  Y
  TTGCCCTTGG GCACTGACCT TGGTAAATGT GATTACGGCC AAAGTGGGGT CCATCAGGGT
  GGTGGGCCAG GAAGTGCTGC AGGAAGGTGG TGAGGTGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147306323	ENSMUSSNP355127	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47741003					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118223280 () rs orientation: forward

Symbol	Name	Function Class
Rr598383	regulatory region 598383	239 bp proximal
Szt2	SZT2 subunit of KICSTOR complex	Intron