rs47733171 SNP Detail

Summary

• ID
  rs47733171
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178275334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACAAGGG CCATATGCTT
  TTCATCTGTC CTGGAGCCTG CAATGGGGCT CTGCCAACTA CCAAATGCAG TTCCACAAGC
  AATCACATGC AAGTTTAACT CTGTCCTGGC AGCCTGGGCT TGGACGCTCA CCCTAGCCAC
  CCCGGCTTCT CCTGGAGTTG AATCAACTTG ACATGCATCC ATTGGTGTCT ACTGTGTGCT
  R
  GACTCCAGGG CAGGCAGAAA GCTGAGGGTC GTGTCGCCTC TGGCCCTGGA AGGGAAGGTG
  AGCCATGCTT TCGGGCTTTG TCCTAAGCTG TAGACATGCT CTGGGTCCAG ACCTGCCCCC
  TGTGATGCCT TGACTCTGCC TCCTGCCTGG CAACAGTATG GTTGCCCACC CCCAGAGGCT
  GCCAGGAAGG AGGAACTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148366684	ENSMUSSNP5327605	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320628576	CHEV_2_178368246	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47733171					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178275334 () rs orientation: forward

Symbol	Name	Function Class
Gm40031	predicted gene, 40031	1217 bp upstream
Rr572440	regulatory region 572440	1914 bp distal
Rr572441	regulatory region 572441	74 bp distal
Rr572442	regulatory region 572442	623 bp proximal