rs47731466 SNP Detail

Summary

• ID
  rs47731466
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141173689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTGGGAG GAGATAATTT
  TGGAGGTAGA ATTGATAAAA CTTGGTGACA ACTTCAGTGA GAAGCCACAG AGTCATCAGG
  TTTGTCCCAT TCTTCAAACT GTAGCGTGCG TGCAGATCAG AGGACACCTT GATTGGGTTC
  TCGTCTTCTA CCGTGTTGAG TCAGAGTCTC TGTCCTTCCT GCTGTGTGGT GTAGCAGGCT
  G
  GCTTCCTGCA TCCATCCGAG TCTCCTTCCA TCTGCCTGGC AGCTCTCCCT GGGAAAGCTG
  AGATCACAGC TGTGCCCCAC TGCATTGTGG GCTTTGAGGA ATCAGACTCA GGTTGTCAGG
  CTTGTCGGGC AACCCTGTCC TTTACTGACG GATGTTGGGA GGAAGCAGGA CCTGGAGCAC
  AGTGAATAAG AGGGAAGATT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147737300	ENSMUSSNP2452540	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47731466					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141173689 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42337	predicted gene, 42337			Intron
Rr603768	regulatory region 603768			1714 bp distal
Rr603769	regulatory region 603769			665 bp distal
Rr603770	regulatory region 603770			1252 bp distal
Tssr40079	transcription start site region 40079			1664 bp downstream
Tssr44320	transcription start site region 44320			938 bp upstream
Zbtb17	zinc finger and BTB domain containing 17			Intron
				Noncoding-Transcript-Variant