rs47727569 SNP Detail

Summary

• ID
  rs47727569
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:142845864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCTTCC AGCAAGCAGA
  GGAAGAGGCC AGCAGTGCAG TGTGGTAAGG AAGCTGCCAC TGGCTTCTGT TTCACCAGGG
  CAAGAGCTGG TGGAGTGTAG GGAGCCCTAG GAACACAGAA GGAAGCTTGG GAGTCGGGAG
  TCTTAACTGG ATAGACTCTC CTTTCCCTTC CAGCTGAACC AAAACAACCA ACTGCAAAAA
  Y
  GCCAAAGGAC AGCTTGTATC TGTCCATTTC CTACCTATGG GGCCATCACT GCTGGGGGCA
  CAAAGGGGCG CCCAGAACGC GCATCCTAAA CAATAAGGAA CAAATCCACA TCCGAGCTCT
  CCAACATGCA GGTCCCTACT CCCAAGAGTC AAATTCTCCA AGCACTTGCA TCCCAGAGGG
  GTTCACTCAC TGCCAGAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147773324	ENSMUSSNP6471907	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47727569					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142845864 () rs orientation: forward

Symbol	Name	Function Class
Prdm2	PR domain containing 2, with ZNF domain	Intron
Rr604158	regulatory region 604158	69 bp distal
Rr604159	regulatory region 604159	739 bp proximal