rs47717952 SNP Detail

Summary

• ID
  rs47717952
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104947355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGGAAGG ATGAAATAAC
  AAAAACAAAA GGAAAAAGCA AGTAGGGGGC TTTAACTTTA TTTCAATTCA TTTATCAAGT
  CAACAGTTAA ACTCTGAATC TCCCAATTTA GGGGAGGAAG TGTGGGTCCA TCACAGAGTC
  AAGAGTAAAC GACCAACAGC ATGCAGGCCA ACCACGAAAT AAGCAGGTCC GGCAATTCTG
  S
  CAGCGCTCGG GCAGAATTAT ACAGCTCAAG GTTTTCAGGA AAAGGCTGCT CTTAACCCAC
  ACTCATTATC AGAGCCATCA CTGCCAGGTT TCAGGCACGC CACCACACAC AGCAGGCTGT
  CGACTCCTGT TTTCTGAGTG AGCTGTTACT ACTGACAGCA TCCATTAAGT GACTTTGAAA
  GACGGGATCA TTCCAACCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60431127	NES15934559	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47717952					SNP	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431127	NES15934559	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104947355 () rs orientation: forward

Symbol	Name	Function Class
Cttnbp2nl	CTTNBP2 N-terminal like	Intron
Rr582653	regulatory region 582653	3 bp proximal
Rr582654	regulatory region 582654	1007 bp proximal