rs47715795 SNP Detail

Summary

• ID
  rs47715795
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22034257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC TAGAATGGTT GCAGTGAGAA
  M
  CAGAAATTTT CATTAAACTC TCCCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss52177447	NES15227139	PERLEGEN	MM_PANEL2	f	SNP	A		A	C	A	A	C	C	C	A	C		A	C
ss146960155	ENSMUSSNP392841	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss323270363	CHEV_10_21878164	CHEVERUD	SCREENING_POP	f	SNP												A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs47715795					SNP	A	C	A	C	A	A	C	C	C	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52177447	NES15227139	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22034257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	41 bp proximal
Cpgi1374	CpG island 1374	829 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	251 bp upstream
Raet1e	retinoic acid early transcript 1E	184 bp upstream
Rr384270	regulatory region 384270	975 bp upstream
Rr428833	regulatory region 428833	within coordinates
Rr428834	regulatory region 428834	239 bp proximal
Tssr92677	transcription start site region 92677	37 bp upstream
Tssr92678	transcription start site region 92678	111 bp upstream
Tssr92679	transcription start site region 92679	163 bp upstream
Tssr92680	transcription start site region 92680	208 bp upstream