rs47710894 SNP Detail

Summary

• ID
  rs47710894
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151909495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCCAGCT TCAGGAAGAG
  GCCTTATCTC AAAATGCAAA AAGAAAAAAG AAAAGAAAGA ATGAAAAGGA AACGAGAGAA
  AGAAGAGGAA GAACCCCGTT TTAACCTCTG GCATATGTGC AGACTCAGAA ATTAATAAGT
  GAATACATTT TTAAAAGAAT GAAAAGTCCT ACTAGTCCAA CTTGAAGCCA GTGCGGCTCT
  R
  CATGTGTGCA TCTTCAAATG ACCCCAAATC ATCTAGAAAA TTGATCTGGG GATGAAAATA
  AATTTGTGAA GTAGGCACAT TCATAAATAC AGAATTGGCA AGAAATGGGG ATTAACTGTA
  TAATGATGTG CCACTAAATA ACTATGGTCA CAAAAAAGAA GAGAAAAGAA AAGGAGAGGA
  GAAGAGAGGG GAGGAAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136101339	ENSMUSSNP6327696	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321028388	CHEV_3_151866822	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47710894					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151909495 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm40180	predicted gene, 40180			within coordinates
Rr367578	regulatory region 367578			158 bp upstream
Rr587488	regulatory region 587488			1899 bp distal
Rr587489	regulatory region 587489			200 bp proximal
Rr587490	regulatory region 587490			628 bp proximal