rs47709575 SNP Detail

Summary

• ID
  rs47709575
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104961602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAC AGTATTTCTT GTCCACACAG
  T
  GCTTCGTTCA TCCATATACT ATCTG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135572955	ENSMUSSNP2499021	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320861383	CHEV_3_104857204	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47709575					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104961602 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13657	CpG island 13657	1043 bp distal
Cttnbp2nl	CTTNBP2 N-terminal like	1140 bp upstream
Rr367520	regulatory region 367520	1136 bp downstream
Rr582659	regulatory region 582659	1346 bp distal
Rr582660	regulatory region 582660	650 bp distal
Rr582661	regulatory region 582661	254 bp proximal
Tssr34913	transcription start site region 34913	1712 bp upstream
Tssr34914	transcription start site region 34914	1569 bp upstream
Tssr34915	transcription start site region 34915	1348 bp upstream
Tssr34916	transcription start site region 34916	1299 bp upstream
Tssr34917	transcription start site region 34917	1135 bp upstream
Tssr34918	transcription start site region 34918	590 bp downstream