rs47709492 SNP Detail

Summary

• ID
  rs47709492
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:112365058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGTGAT ATACAGCCAG
  GTCTTGCTCT GTGTTGGCTA CAGAAGTGGC CCCCGCCATC CCAGTCTCTA CTCACTGTCC
  TCCTCACTCG GGTCCCTGTC CATGGTCGAG GCGTCCAGCC AAGTAACGAG TCTGTGCTCC
  TGAGGACCGA GGTTCCAATC TGAGGGACTA CCCTCAGCCC CTCCCAGCCC ATTGTTACCG
  M
  TCTGGACATA ACAGAGGCAA AGCCACCATA TGTCCATCAG AGCAGAGCCC CGCCCTATGT
  CCCAGGTCCT TGAGAGTCCC ATAAGAGGCC TTTTACTTGC CAAGCTCACG TGGAAGTTCT
  AGAGACCTGG GTCCCTGCTA CATTCAGTGT GGATACTCAC ATCCTGCCAT TGTTCCCAGC
  CAAGACTCAA ATTCTTCTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60929804	NES16197557	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47709492					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60929804	NES16197557	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112365058 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636339	regulatory region 636339			within coordinates
Rr636340	regulatory region 636340			1504 bp proximal
Ssu2	ssu-2 homolog			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Tssr62400	transcription start site region 62400			60 bp upstream