rs47707218 SNP Detail

Summary

• ID
  rs47707218
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52199916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGAGGCCTA GCTTTCTGAT GCTTCTCTGG TCGCCTGGCA
  AATAGATCCG AGTCTATTTG CTCCTCCGCT GGACTTCCCA GCTTTCCGCC TCTGCTTCCT
  W
  GCTACCGGCA ACCATCTGAG TCGAGGGTGC TTAGGCCTGG CCCAACTACG GCTGGTTCCA
  GCGAGAGAGA GACCGAATTA GGGCTTTATC AACCTCACCT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60886894	NES15970367	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47707218					SNP	A	A	A	T	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60886894	NES15970367	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52199916 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17429	CpG island 17429	819 bp distal
Cpgi17430	CpG island 17430	1389 bp proximal
Gm57855	predicted gene, 57855	161 bp downstream
Hoxa7	homeobox A7	1159 bp upstream
Hoxa9	homeobox A9	161 bp downstream
Rr630375	regulatory region 630375	1111 bp distal
Rr630376	regulatory region 630376	747 bp distal
Tssr61005	transcription start site region 61005	1345 bp upstream
Tssr61006	transcription start site region 61006	1657 bp downstream