rs47700242 SNP Detail

Summary

• ID
  rs47700242
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32243368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAC AGGATGTGGT GAGCCATCTT
  W
  CTTGGGGGTT GGGAACCAAC TCAGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss134746357	ENSMUSSNP2371934	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320697188	CHEV_3_32088141	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47700242					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32243368 () rs orientation: forward

Symbol	Name	Function Class
Kcnmb2	potassium large conductance calcium-activated channel, subfamily M, beta member 2	Intron
Rr574931	regulatory region 574931	400 bp distal
Rr574932	regulatory region 574932	477 bp distal
Rr574933	regulatory region 574933	41 bp distal
Rr574934	regulatory region 574934	812 bp proximal