rs47700181 SNP Detail

Summary

• ID
  rs47700181
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135716748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCTGCCTG CTTATCACCT
  GGGTGGGGCA GAGGGAGGAG GAGGGAGCGG CGTGGGAGAT GGAACAGTCA GAGCGTGGCC
  AGTTACTCGG GCGTTTCCAT ATATAAATCA CTCACAGACA GACACACAGA GTCCTTCATT
  GCTCCCTCTG GCGGCAAGCA GAGCTTCATC TCTTTCTCCA GGAACCTCAG CTCCTAGATG
  Y
  ACTCAGAGAA CCAAAACAAA GTCAAAACAA CAACAACAAC AACAACAGCA TGTTCCCACA
  GACACTTCAT TTGGTAATTT GGGGTTTCTC ACTAAACCAC AAGATCCTCA GAGCTCACTA
  GCAATGGGCA AGCCTATTCT GAAGTAACTT GCATGGAAGA CAATTCCTTG GGACTCAGCA
  GGTAAAAATG CTTGTAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145546339	ENSMUSSNP2232094	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47700181					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135716748 () rs orientation: forward

Symbol	Name	Function Class
Rr419276	regulatory region 419276	717 bp distal
Rr419277	regulatory region 419277	1010 bp distal
Rr419278	regulatory region 419278	within coordinates
Rr419279	regulatory region 419279	42 bp distal
Rr419280	regulatory region 419280	724 bp proximal
Rr419281	regulatory region 419281	995 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron