rs47699642 SNP Detail

Summary

• ID
  rs47699642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95785221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCGGAA TGCTGCAGGC
  TGCTTCAAAG GCCCATTGTG GAAAGCTTCC AGATGTGTAT GGAAAACCTC ACTGGGAGCT
  TCCCAGTGAA GAGACTTCTT AGGCCTGAGC CAAGCTGAAG GAAGTAGATG TGACACATCC
  CTACCAGGTG GGCTGTATTC TGAAGGAGTC CAGATTCTAC CTTGAAGGAG AGACCAAGGA
  Y
  AGTTACCCAG TCCAGATGCC AGAGCCAAGC AGTGTGTCCT CTTTGGTTAC AGACAGCAAT
  GGGGTTTGCT GGAGTGAGAC AGAAAGGCAT TCTCCCACGC AGGAATCTTC CTGAAAATTG
  CTCATGACAG TTTCTTTGCT CCTCCAGCAT ATCATGTACA GGAGGGATTT CAGGTTGGAA
  AAATGGCCAA CCATAGAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147068309	ENSMUSSNP1861018	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321216050	CHEV_4_95563675	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47699642					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95785221 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595485	regulatory region 595485			1445 bp distal
Rr595486	regulatory region 595486			within coordinates
Rr595487	regulatory region 595487			324 bp proximal
Rr595488	regulatory region 595488			347 bp proximal
Rr595489	regulatory region 595489			480 bp proximal