rs47698844 SNP Detail

Summary

• ID
  rs47698844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150279674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTCCTCA CGTTTGCACG
  GAAAACTCTG ACTGAGCTAG CTCCCCCAGT TCCCGTATCT CTCTCCTTCT TAGCATGGGA
  AACGTTTTTG TTGAAACGTG AACATATCAG ACAGTATGTG CAAGCAGTTC TGATTCTGAT
  CTTCTAAAAC CATGCTGTGG CGTTTTCTGA TGTGTCTATT TGTGGGCTTG TTTAGGTGTT
  Y
  GCCCGTGTTT AACCTGCAGA ATGTGCCTCC GTGGCAGCAC AGAGCAGTTA ATGTCGCTGC
  TAAGATTGAT GCTTCTAGAT TTTAAATTTT ACTTATTTAT CTATTTATGT TATATGAAAA
  CAACTGGGTA TTTCATTTTG CTTATAACTT TATCCAGCTT TTACGTAAAG TTTTTGAGAA
  TTAGAGTCCT GTCTACTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148049953	ENSMUSSNP6636638	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47698844					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150279674 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605219	regulatory region 605219			998 bp distal
Rr605220	regulatory region 605220			1084 bp distal
Tssr40386	transcription start site region 40386			877 bp upstream
Tssr44728	transcription start site region 44728			1442 bp upstream
Tssr44729	transcription start site region 44729			862 bp downstream
Tssr44730	transcription start site region 44730			892 bp downstream
Tssr44731	transcription start site region 44731			925 bp downstream